Move common stuff in seperate trabanslation unit

Rename main to madap

src/madap.cpp

@@ -0,0 +1,83 @@
+#include <eisgenerator/translators.h>
+#include <eisgenerator/eistype.h>
+#include <iostream>
+#include <string>
+#include <vector>
+#include <filesystem>
+
+#include "csvBackend.h"
+#include "tokenize.h"
+#include "common.h"
+
+void trimBrackets(std::string& str)
+{
+	if(str[0] == '[')
+		str.erase(str.begin());
+	if(str.back() == ']')
+		str.pop_back();
+}
+
+std::vector<eis::DataPoint> parseEisDataFromMadapArrays(std::string& freqArray, std::string& realArray, std::string& imaginaryArray)
+{
+	assert(realArray.size() > 2);
+	assert(imaginaryArray.size() > 2);
+	trimBrackets(realArray);
+	trimBrackets(imaginaryArray);
+	trimBrackets(freqArray);
+
+	std::vector<std::string> freqTokens = tokenize(freqArray, ',');
+	std::vector<std::string> realTokens = tokenize(realArray, ',');
+	std::vector<std::string> imaginaryTokens = tokenize(imaginaryArray, ',');
+	assert(realTokens.size() == freqTokens.size() && realTokens.size() == imaginaryTokens.size());
+
+	std::vector<eis::DataPoint> data;
+	data.reserve(freqTokens.size());
+	for(size_t i = 0; i < freqTokens.size(); ++i)
+		data.push_back(eis::DataPoint(std::complex<fvalue>(std::stod(realTokens[i]), std::stod(imaginaryTokens[i])), 2*M_PI*std::stod(freqTokens[i])));
+
+	std::sort(data.begin(), data.end(), [](const eis::DataPoint& a, const eis::DataPoint& b){return a.omega < b.omega;});
+	return data;
+}
+
+int main(int argc, char** argv)
+{
+	if(argc < 2)
+	{
+		std::cerr<<"Usage: "<<(argc > 0 ? argv[0] : "NULL")<<" [FILE] [OUTDIR]\n";
+		return 1;
+	}
+
+	io::CSVReader<7, io::trim_chars<' ', '\t'>, io::no_quote_escape<';'>> csvFile(argv[1]);
+	csvFile.read_header(io::ignore_extra_column, "experimentID", "temperature", "frequency",
+		"real_impedance", "imaginary_impedance", "EIS_fittedParameters", "EIS_circuit");
+
+	if(!csvFile.next_line())
+		return 1;
+	if(!csvFile.next_line())
+		return 1;
+
+	std::string frequencyArray;
+	std::string realArray;
+	std::string imaginaryArray;
+	std::string paramArray;
+	std::string circutString;
+	std::string idStr;
+	double temperature;
+
+	std::filesystem::path outDir("./out");
+	if(argc == 3)
+		outDir = argv[2];
+
+	if(!checkDir(outDir))
+		return 1;
+
+	while(csvFile.read_row(idStr, temperature, frequencyArray, realArray, imaginaryArray, paramArray, circutString))
+	{
+		ModelData data;
+		data.modelStr = eis::madapToEis(circutString, paramArray);
+		data.id = idStr;
+
+		data.data = parseEisDataFromMadapArrays(frequencyArray, realArray, imaginaryArray);
+		saveData("madap", data, outDir, argv[1]);
+	}
+}